Additional file 9 of Microbial colonization and resistome dynamics in food processing environments of a newly opened pork cutting industry during 1.5 years of activity

  1. Cobo-Díaz, José F.
  2. Alvarez-Molina, Adrián
  3. Alexa, Elena A.
  4. Walsh, Calum J.
  5. Mencía-Ares, Oscar
  6. Puente-Gómez, Paula
  7. Likotrafiti, Eleni
  8. Fernández-Gómez, Paula
  9. Prieto, Bernardo
  10. Crispie, Fiona
  11. Ruiz, Lorena
  12. González-Raurich, Montserrat
  13. López, Mercedes
  14. Prieto, Miguel
  15. Cotter, Paul
  16. Alvarez-Ordóñez, Avelino

Editor: figshare

Year of publication: 2021

Type: Dataset

CC BY 4.0

DOI: 10.6084/M9.FIGSHARE.16807591 lock_openOpen access editor

Abstract

Additional file 9. Phenotypes table. Document phenotypes.txt downloaded from the ResFinder repository ( https://bitbucket.org/genomicepidemiology/resfinder_db/src/master/ ) and manually curated in order to modify the class variable, grouping those genes that confer resistance to macrolides, lincosamides, streptogramins and pleuromutilins into the MLSP class, and those that confer resistance to oxazolidinones into the oxazolidinone class. This last group included cfr genes, which confer resistance to phenicols, lincosamides, oxazolidinones, pleuromutilins and streptogramins, the optrA gene, which confers resistance to phenicols and oxazolidinones, and the poxtA gene, which confers resistance to phenicols, oxazolidinones and tetracyclines.