Additional file 8 of Microbial colonization and resistome dynamics in food processing environments of a newly opened pork cutting industry during 1.5 years of activity

  1. Cobo-Díaz, José F.
  2. Alvarez-Molina, Adrián
  3. Alexa, Elena A.
  4. Walsh, Calum J.
  5. Mencía-Ares, Oscar
  6. Puente-Gómez, Paula
  7. Likotrafiti, Eleni
  8. Fernández-Gómez, Paula
  9. Prieto, Bernardo
  10. Crispie, Fiona
  11. Ruiz, Lorena
  12. González-Raurich, Montserrat
  13. López, Mercedes
  14. Prieto, Miguel
  15. Cotter, Paul
  16. Alvarez-Ordóñez, Avelino

Éditeur: figshare

Année de publication: 2021

Type: Dataset

CC BY 4.0

DOI: 10.6084/M9.FIGSHARE.16807588 lock_openAccès ouvert editor

Résumé

Additional file 8. Samples Metadata, DNA quantity and quality, reads and information on the culture-dependent approach. Columns from A to G indicate sample names together with their temporal and spatial location. Columns from H to N correspond to parameters related to the DNA extraction process and the total and filtered reads obtained after shotgun sequencing. Columns from O to Z detail the occurrence of different microorganisms in the culture dependent analyses, their phenotypic resistance to specific antibiotics, as revealed through their growth on selective agar plates, and the detection of ARGs. Resistant Pseudomonas spp. isolates harboring ARGs for β-lactams and carbapenems were not detected.